CLIP base

Visualize Ago-mRNA (3'UTR) interactions:

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CLIP Base is maintained by Aly Azeem Khan at the Toyota Technological Institute at Chicago [here].

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The CLIP Base portal provides visualization and analysis of high-throughput sequencing of Argonaute binding in 3' UTR of mRNA sequences.

Transcriptome-wide miR-155 Binding Map Reveals Widespread Noncanonical MicroRNA Targeting.
Loeb GB*, Khan AA*, Canner D, Hiatt JB, Shendure J, Darnell RB, Leslie CS, Rudensky AY. (*Equal Contribution)
Molecular Cell, 2012 Nov 8. Data.

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