Computational resource for Argonaute binding in immunological cells

Visualize Ago-mRNA (3'UTR) interactions:

Step 1: Select Cell Type:
Step 2: Gene Symbol or RefSeq ID:


CLIP Base works well on the following browsers: Safari 5.0+, Firefox 3.6+ and Google Chrome 8.0+.

CLIP Base is maintained by Aly Azeem Khan at the Toyota Technological Institute at Chicago [here].


The CLIP Base portal provides visualization and analysis of high-throughput sequencing of Argonaute binding in 3' UTR of mRNA sequences.

Transcriptome-wide miR-155 Binding Map Reveals Widespread Noncanonical MicroRNA Targeting.
Loeb GB*, Khan AA*, Canner D, Hiatt JB, Shendure J, Darnell RB, Leslie CS, Rudensky AY. (*Equal Contribution)
Molecular Cell, 2012 Nov 8. Data.